| acid_flow_rate |
The rate at which acid is added to the system for pH control (mL/min) |
| acid_type |
The type of acid used for pH adjustment in the fermentation process |
| acid_weight |
The total weight of acid added during the fermentation process |
| aeration_rate |
The rate at which the oxygen-containing gas is supplied to the vessel |
| agitation_rate |
The speed of agitation or stirring in the vessel (rpm) |
| amount_of_inoculum |
The volume, OD or mass of inoculum added to the fermentation vessel |
| antifoam_type |
The type of antifoam agent used to control foam formation in the vessel |
| antifoam_weight |
The total weight of antifoam added during the fermentation process |
| assay_identifier |
unique identifier of the related assay (multiple assays can be performed on t... |
| assay_type |
type of the assay |
| bacdive_id |
ID used by the bacdive database |
| base_flow_rate |
The rate at which base is added to the system for pH control (mL/min) |
| base_type |
The type of base used for pH adjustment in the fermentation process |
| base_weight |
The total weight of base added during the fermentation process |
| biosafety_level |
The levels of containment range from the lowest biosafety level 1 to the high... |
| compound_name |
Chemical compounds used in the fermentation process as feed |
| concentration |
The amount of a compound present per unit volume or mass (expressed in mg/L o... |
| concentration_method |
The method used to concentrate the inoculum, e |
| control_scheme |
The system or methodology used to monitor, regulate, and optimize the various... |
| cultivation_type |
The type of cultivation process used, e |
| culture_collection_id |
culture collection numbers of the strain |
| description |
description of the purpose of the fermentation run |
| designations |
designations of the strains |
| dilution_rate |
The inital rate at which fresh medium is added and spent medium is removed in... |
| end_date |
date that the fermentation run ended |
| fedbatch_rate |
The rate at which feed is supplied during fed-batch fermentation |
| fedbatch_trigger |
The conditions that trigger feed addition in fed-batch processes, such as sub... |
| fedbatch_type |
The type of fed-batch fermentation (e |
| feed_flow_rate |
The rate at which feed is added to the fermentation vessel, (mL/min or L/h) |
| feed_type |
The type of feed used during the fermentation process, such as liquid, solid,... |
| feed_weight |
The total weight of feed material added during the fermentation process |
| gas_flow_rate |
The rate of gas introduced into the vessel (mL/min or L/min) |
| gas_input_composition |
The initial composition of gases supplied to the vessel (e |
| gmo |
is the strain genetically modified? |
| harvest_flow_rate |
The rate at which the biomass or product is collected from the vessel |
| harvest_weight |
The total weight of material collected at the end of the fermentation process |
| harvesting_conditions |
The specific conditions under which the inoculum is harvested, such as temper... |
| id |
unique study identifier |
| induction_rate |
The speed or extent of the induction (per volume of culture or per time unit) |
| induction_trigger |
The specific condition or signal that initiates induction, such as temperatur... |
| induction_trigger_duration |
The time period for which induction conditions are maintained |
| induction_type |
The method used to induce gene expression or metabolic activity, e |
| initial_working_volume |
The starting volume of liquid in the fermentation vessel |
| inoculation_source |
The origin of the inoculum, such as a strain collection or preculture flask |
| inoculum_composition |
The composition of the inoculum, including strains and concentrations/proport... |
| inoculum_duration |
The time for which the inoculum is cultured before use |
| inoculum_type |
The type of inoculum used, such as a single strain or a mixed culture |
| input_localisation |
The physical location or point where inputs like feed or gas are introduced i... |
| internal_id |
A laboratory specific internal ID from the labotatory that performed the anal... |
| local_id |
ID used by the laboratory that uses/developed the strain |
| modifications |
what was genetically modified? |
| morphology |
morphology of the strain |
| observation_unit_id |
unique identifier of the related study (multiple observationUnits can be part... |
| observation_unit_identifier |
unique observation unit identifier |
| organism |
type of organism |
| oxygen_dependence |
oxygen dependent metabolism of the strain |
| pathogenicity |
pathogenic to a specific group (e |
| pco2 |
partial CO2 pressure |
| ph |
The initial set pH value |
| phase |
A distinct stage in the fermentation process, such as lag phase, log phase, o... |
| phase_duration |
The total time duration of a specific phase in minutes during the fermentatio... |
| phase_end_time |
The time when a specific phase ends during the fermentation process |
| phase_purpose |
The intended outcome or goal of a specific phase in the process, e |
| phase_start_time |
The time when a specific phase begins during the fermentation process |
| po2 |
partial O2 pressure |
| preculture_description |
A detailed description of the preculture, including growth conditions |
| preculture_medium |
The medium used to grow the preculture before inoculation |
| predox |
Oxidation-reduction potential (ORP) in the vessel |
| pressure |
The set pressure level maintained during the fermentation process |
| protocol |
URL of a document that described the "protocol" of the fermentation run |
| protocol_url |
standard operating procedure (or protocol) |
| purification_method |
The method used to purify the product, e |
| recipe_url |
standard operating procedure (or protocol) for sampling |
| references |
useful articles used as basis/starting point for the present study |
| relative_pressure |
The pressure relative to atmospheric pressure maintained in the vessel |
| replicate |
A role played by a a biological sample in the context of an experiment where ... |
| replicate_id |
A unique identifier for experimental replicates in the fermentation study |
| replicate_type |
The type of replicate, e |
| resistance |
what substance is the strain resistant to? |
| resistance_mic |
concentration for the resistance (MIC) |
| sample_collection_device |
The device used for collecting the sample |
| sample_collection_method |
The method employed for collecting the sample |
| sample_description |
description of the sample |
| sample_dry_mass |
measurement of dry mass at the time of sample collection |
| sample_id |
unique identifier (does not need to be human readable) of the related sample ... |
| sample_identifier |
unique sample identifier |
| sample_material |
Sample material from which data deposited was generated |
| sample_material_processing |
Any processing applied to the sample during or after retrieving the sample fr... |
| sample_name |
name of the sample |
| sample_storage_buffer |
buffer used for sample storage |
| sample_storage_conditions |
Additional information about the conditions at which sample was stored |
| sample_storage_container |
Container that sample was stored in e |
| sample_storage_duration |
duration for which sample was stored |
| sample_storage_location |
location at which sample was stored, usually name of a specific freezer/room |
| sample_storage_temperature |
temperature at which sample was stored |
| sample_treatment |
Treatment applied to the sample |
| sample_wet_mass |
measurement of wet mass at the time of sample collection |
| sampling_time_point |
date that the sample was collected |
| sequence_accession_number |
accession number of the sequence in public sequence databases |
| source |
where does the strain come from |
| species |
name of the species |
| sporulation |
does the strain exhibits endospore formation? |
| start_date |
date that the fermentation run was initiated |
| study_id |
unique identifier of the related study (multiple studies can be part of the s... |
| substrate_flow_rate |
The rate at which the substrate is added to the fermentation vessel |
| target_metabolite |
The specific compound or metabolite that is the desired outcome of the fermen... |
| taxonomy_id |
NCBI taxonomy ID of the strain |
| technology_type |
technology used to perform the assay |
| temperature |
The inital set temperature |
| temperature_of_inoculum |
The temperature at which the inoculum is maintained |
| title |
title of the cultivation/fermentation (bioreactor, well) |
| vessel_id_ |
unique identifier of the vessel that was used to perform the run (refers to M... |
| volume |
Liquid volume in the vessel |
| water_flow_rate |
The rate at which water is added to the system, (L/h or mL/min) |
| weight |
The total weight of the vessel contents, including medium and biomass |