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Class: Assay (Assay)

Specific individual experiments or measurements applied on samples. (An assay is a combination of a process (experiment) and a protocol., http://jermontology.org/ontology/JERMOntology#Assay)

URI: mife:Assay

 classDiagram
    class Assay
    click Assay href "../Assay/"
      Assay : assay_identifier





        Assay --> "1..*" Assay : assay_identifier
        click Assay href "../Assay/"



      Assay : assay_type

      Assay : description

      Assay : end_date

      Assay : protocol_url

      Assay : start_date

      Assay : technology_type

      Assay : title

Slots

Name Cardinality and Range Description Inheritance
assay_identifier 1..*
Assay		 unique identifier of the related assay (multiple assays can be performed on t... direct
title 1
String		 title of the cultivation/fermentation (bioreactor, well) direct
description 1
String		 description of the purpose of the fermentation run direct
start_date 0..1
Date		 date that the fermentation run was initiated direct
end_date 0..1
Date		 date that the fermentation run ended direct
assay_type 0..1
String		 type of the assay direct
technology_type *
String		 technology used to perform the assay direct
protocol_url 0..1
String		 standard operating procedure (or protocol) direct
assay_identifier 1..*
Assay		 unique identifier of the related assay (multiple assays can be performed on t... direct

Usages

used by used in type used
Assay assay_identifier range Assay

Identifier and Mapping Information

Schema Source

  • from schema: https://ontology.ibisba.eu/mife/

Mappings

Mapping Type Mapped Value
self mife:Assay
native mife:Assay

LinkML Source

Direct

name: Assay
description: Specific individual experiments or measurements applied on samples. (An
  assay is a combination of a process (experiment) and a protocol., http://jermontology.org/ontology/JERMOntology#Assay)
title: Assay
from_schema: https://ontology.ibisba.eu/mife/
slots:
- assay_identifier
- title
- description
- start_date
- end_date
- assay_type
- technology_type
- protocol_url
- assay_identifier
class_uri: mife:Assay

Induced

name: Assay
description: Specific individual experiments or measurements applied on samples. (An
  assay is a combination of a process (experiment) and a protocol., http://jermontology.org/ontology/JERMOntology#Assay)
title: Assay
from_schema: https://ontology.ibisba.eu/mife/
attributes:
  assay_identifier:
    name: assay_identifier
    description: unique identifier of the related assay (multiple assays can be performed
      on the same sample)
    examples:
    - value: ASSAY_1
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: jermontology:hasPart
    alias: assay_identifier
    owner: Assay
    domain_of:
    - Assay
    range: Assay
    required: true
    multivalued: true
  title:
    name: title
    description: title of the cultivation/fermentation (bioreactor, well)
    examples:
    - value: 12h Bioreactor run of PBAD in PET28A under 0.05% Arabinose
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: schema:title
    alias: title
    owner: Assay
    domain_of:
    - Assay
    - Investigation
    - Study
    - ObservationUnit
    range: string
    required: true
    multivalued: false
  description:
    name: description
    description: description of the purpose of the fermentation run
    examples:
    - value: A 12h Bioreactor run using PBAD in PET28A with a concentration of 0.05%
        Arabinose
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Assay
    domain_of:
    - Assay
    - Investigation
    - Study
    - ObservationUnit
    range: string
    required: true
    multivalued: false
  start_date:
    name: start_date
    description: date that the fermentation run was initiated
    examples:
    - value: 12-01-2023
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: schema:startDate
    alias: start_date
    owner: Assay
    domain_of:
    - Assay
    - Investigation
    - Study
    - ObservationUnit
    range: date
    required: false
    multivalued: false
  end_date:
    name: end_date
    description: date that the fermentation run ended
    examples:
    - value: 13-01-2023
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: schema:endDate
    alias: end_date
    owner: Assay
    domain_of:
    - Assay
    - Investigation
    - Study
    - ObservationUnit
    range: date
    required: false
    multivalued: false
  assay_type:
    name: assay_type
    description: type of the assay
    examples:
    - value: OD measurement
    - value: physico-chemical measurement
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: schema:additionalType
    alias: assay_type
    owner: Assay
    domain_of:
    - Assay
    range: string
    required: false
    multivalued: false
  technology_type:
    name: technology_type
    description: technology used to perform the assay
    examples:
    - value: UV Spectrophotometer
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: mife:hasTechnologyType
    alias: technology_type
    owner: Assay
    domain_of:
    - Assay
    range: string
    required: false
    multivalued: true
  protocol_url:
    name: protocol_url
    description: standard operating procedure (or protocol)
    examples:
    - value: https://ibisbahub.eu/sops/21
    from_schema: https://ontology.ibisba.eu/mife/
    rank: 1000
    slot_uri: w3:usedProcedure
    alias: protocol_url
    owner: Assay
    domain_of:
    - Assay
    range: string
    required: false
    multivalued: false
class_uri: mife:Assay